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About
President
Governance
Partner Institutions
Visit
People
Management
Faculty
Postdocs
Visiting Scholars
Staff
Research
Research Groups
Courses
Seminars
Join Us
Faculty
Postdocs
Students
Events
Conferences
Workshops
Forum
Life @ BIMSA
Accommodation
Transportation
Facilities
Tour
News
News
Announcement
Downloads
Qiuzhen College, Tsinghua University
Yau Mathematical Sciences Center, Tsinghua University (YMSC)
Tsinghua Sanya International  Mathematics Forum (TSIMF)
Shanghai Institute for Mathematics and  Interdisciplinary Sciences (SIMIS)
BIMSA > Seminar on Bioinformatics The progress of the grand project
The progress of the grand project
Organizer
Shing Toung Yau
Speaker
Nan Sun
Time
Wednesday, November 23, 2022 9:45 PM - 10:00 PM
Venue
Online
Abstract
The validation datasets of genome universe were downloaded from the RefSeq database (https://ftp.ncbi.nlm.nih.gov/refseq/release/), Assembly GCF database (https://ftp.ncbi.nlm.nih.gov/genomes/refseq/) and Assembly GCA database (https://ftp.ncbi.nlm.nih.gov/genomes/genbank/). Up to now, we have collected 24719 nucleoid sequences belonging to 425 families for bacteria, 440 chromosome sequences belonging to 7 phyla for archaea, 2628 chromosome sequences belonging to 23 families for fungi, 400 chromosome sequences belonging to 22 families for plant, 1200 chromosome sequences belonging to 20 families for protozoa, 390 chromosome sequences belonging to 72 families for vertebrates. The corresponding genome space and natural metric have been determined: their genome spaces are sitting in 48, 48, 40, 24, 36, 28, respectively, and the metrics are d9, D10, d9, d2, D9, D2, respectively. Only Invertebrates’ result is absent. I will report on the progress of the project.
Beijing Institute of Mathematical Sciences and Applications
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