BIMSA > 生物信息讨论班 The progress of the grand project
The progress of the grand project
组织者
丘成栋
演讲者
孙楠
时间
2022年11月23日 21:45 至 22:00
地点
Online
摘要
The validation datasets of genome universe were downloaded from the RefSeq database (https://ftp.ncbi.nlm.nih.gov/refseq/release/), Assembly GCF database (https://ftp.ncbi.nlm.nih.gov/genomes/refseq/) and Assembly GCA database (https://ftp.ncbi.nlm.nih.gov/genomes/genbank/). Up to now, we have collected 24719 nucleoid sequences belonging to 425 families for bacteria, 440 chromosome sequences belonging to 7 phyla for archaea, 2628 chromosome sequences belonging to 23 families for fungi, 400 chromosome sequences belonging to 22 families for plant, 1200 chromosome sequences belonging to 20 families for protozoa, 390 chromosome sequences belonging to 72 families for vertebrates. The corresponding genome space and natural metric have been determined: their genome spaces are sitting in 48, 48, 40, 24, 36, 28, respectively, and the metrics are d9, D10, d9, d2, D9, D2, respectively. Only Invertebrates’ result is absent. I will report on the progress of the project.