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Seminar on Bioinformatics
Results of convex hull principle analysis and 1NN classification of Kinase proteins and Phosphatase proteins
Results of convex hull principle analysis and 1NN classification of Kinase proteins and Phosphatase proteins
Organizer
Speaker
Mengcen Guan
Time
Thursday, September 7, 2023 3:00 PM - 3:30 PM
Venue
Online
Abstract
Based on the former research on kinase proteins of Dr. XIN Zhao, this week, I downloaded both kinase proteins and phosphatase proteins from iEKPD database, which is the ver 2.0 database and includes more protein sequences. Both convex hull analysis and 1NN classification were applied on this dataset. I also applied these steps on animal proteins, plant proteins and fungi proteins respectively. Besides, we can also do some phylogenetic analysis on specific dataset, for example, homo sapiens.