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About
President
Governance
Partner Institutions
Visit
People
Management
Faculty
Postdocs
Visiting Scholars
Staff
Research
Research Groups
Courses
Seminars
Join Us
Faculty
Postdocs
Students
Events
Conferences
Workshops
Forum
Life @ BIMSA
Accommodation
Transportation
Facilities
Tour
News
News
Announcement
Downloads
Qiuzhen College, Tsinghua University
Yau Mathematical Sciences Center, Tsinghua University (YMSC)
Tsinghua Sanya International  Mathematics Forum (TSIMF)
Shanghai Institute for Mathematics and  Interdisciplinary Sciences (SIMIS)
BIMSA > Seminar on Bioinformatics Review on a paper about comparative study of plant genome assembly
Review on a paper about comparative study of plant genome assembly
Organizer
Shing Toung Yau
Speaker
(Tsinghua) Tao Zhou
Time
Thursday, November 9, 2023 9:00 PM - 9:30 PM
Venue
Online
Abstract
This week we will review a paper submitted to Current Genomics: The Yellow Brick Road: A Comparative Study of Plant Genome Assembly Using ONT Sequences with a Pipeline for Beginners. This paper bases on the fact that the assembly process of plant genome which are large and rich in repetitive sequences is a big challenge. The authors sequenced the whole genome of three South American Myrtaceae species and testing different assembling strategies using four different assemblers (Canu, Flye, Raven, and Shasta, with and without polishing) and they concluded that there is no unique approach for a reliable assembly of whole plant genomes, as each species has its own characteristics, making the assembly exclusive.
Beijing Institute of Mathematical Sciences and Applications
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