BIMSA > Qi Wu
Associate Professor Qi Wu

Group: Statistics, Probability and Data Science

Office: A3-2a-202

Email: wuqi@bimsa.cn

Research Field: evolutionary genomics and bioinformatics

Research Interest

  • evolutionary dynamics of complex trait
  • alignment-free methods for sequence analysis

Education Experience

  • -      Fudan University      Genetics      Doctor      Joint Master's and Doctoral Program      (Supervisor: Long Yu)
  • -      Hebei University      Microbiology      B.Sc.      (Supervisor: Liping Zhang)

Work Experience

  • -      中国科学院微生物研究所      项目研究员      PI、博导
  • -      中国科学院动物研究所      助理研究员、副研究员
  • -      复旦大学遗传工程国家重点实验室      研究助理
  • -      复旦大学生物医学研究院      博士后

Honors and Awards

  • 2019      国家自然科学奖二等奖      “大熊猫适应性演化与濒危机制研究”，第四完成人

Publication

  • [1] Guohui Shi, Yi Dai , Da Zhou , Mengmeng Chen , Jiaqi Zhang , Yilong Bi , Shuai Liu & Qi Wu*, An alignment- and reference-free strategy using k-mer present pattern for population genomic analyses, Mycology(2024)
  • [2] Yuan Zeng#, Yuqin Song#, Lanqing Cui#, Qi Wu, Chao Wang, Adriano Cappellazzo Coelho, Gang Zhang, Dawei Wei, Chao Li, Jingren Zhang, Jacques Corbeil, Yun Li & Jie Feng*, Phylogenomic insights into evolutionary trajectories of multidrug resistant S. pneumoniae CC271 over a period of 14 years in China, Genome Medicine, 15(2023), 1, 46
  • [3] Meng-Meng Chen, Guo-Hui Shi, Yi Dai, Wen-Xia Fang, Qi Wu*, Identifying genetic variants associated with amphotericin B (AMB) resistance in Aspergillus fumigatus via k- mer - based GWAS, Frontiers in Genetics, 14(2023), 1133593
  • [4] Yi Dai, Guohui Shi, Mengmeng Chen, Guotao Chen, Qi Wu*, Using Polygenic Risk Scores Related to Complex Traits to Predict Production Performance in Cross-Breeding of Yeast, Journal of Fungi, 8(2022), 9, 914
  • [5] Zhilin Yuan#, Qi Wu#, Liangxiong Xu#, Irina S Druzhinina#, ... Francis M Martin*, Genomic landscape of a relict fir-associated fungus reveals rapid convergent adaptation towards endophytism, ISME J, 16(2022), 5, 1294-1305
  • [6] Huizhong Fan, Lei Chen, Yibo Hu, Guohui Shi, Yi Dai, Fuwen Wei, and Qi Wu, A whole-genome association approach for large-scale interspecies traits, SCIENCE CHINA Life Sciences, 64(2021), 1372-1374
  • [7] Jiuhong Dong#, Shuai Liu#, Yaran Zhang, Yi Dai and Qi Wu*, A New Alignment-Free Whole Metagenome Comparison Tool and Its Application on Gut Microbiomes of Wild Giant Pandas., Frontiers in Microbiology, 11(2020), 1061
  • [8] Huizhong Fan#, Qi Wu#, Fuwen Wei, Fengtang Yang, Bee Ling Ng & Yibo Hu*, Chromosome-level genome assembly for giant panda provides novel insights into Carnivora chromosome evolution., Genome Biology, 20(2019), 1, 267
  • [9] Shuai Liu#, Shaojun Pei#, Stephen S.-T. Yau*, and Qi Wu*, Assessment of kmer degeneration method for complicated genomes., Communications in Information and Systems, 19(2019), 1, 17-35
  • [10] Qi Wu, Yadi Wang, Yun Ding, Shuai Ma, Zongmin Wu*, Fuwen Wei*, A natural communication system on genome evolution, Science China - Life Science, 60(2017), 4, 432-435
  • [11] Yibo Hu#, Qi Wu#, Shuai Ma#, Tianxiao Ma#, Lei Shan, Xiao Wang, Yonggang Nie, Zemin Ning, Li Yan, Yunfang Xiu, Fuwen Wei*, Comparative genomics reveals convergent evolution between the bamboo-eating giant and red pandas, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(2016), 5, 1081-1086
  • [12] Yonggang Nie#, John R. Speakman#, Qi Wu#, Chenglin Zhang, Yibo Hu, Maohua Xia, Li Yan, Catherine Hambly, Lu Wang, Wei Wei, Jingguo Zhang, Fuwen Wei*, Exceptionally low daily energy expenditure in the bamboo-eating giant panda, Science, 349(2015), 6244, 171-174
  • [13] Shancen Zhao#, Pingping Zheng#, Shanshan Dong#, Xiangjiang Zhan#, Qi Wu#, ... Jun Wang* & Fuwen Wei*, Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation, Nature Genetics, 45(2013), 1, 67-U99
  • [14] Lifeng Zhu#, Qi Wu#, Jiayin Dai, Shanning Zhang, Fuwen Wei*, Evidence of cellulose metabolism by the giant panda gut microbiome, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(2011), 43, 17714-17719
  • [15] Qi Wu, Xiuting Gu, Yu Wang, Nan Li, Xianghua Liu, Chaoqun Wu, Long Yu* and Xun Gu*, Neurotransmitter inactivation is important for the origin of nerve system in animal early evolution: A suggestion from genomic comparison, Progress in Neurobiology, 78(2006), 6, 390-395

 

Update Time: 2024-09-12 17:18:16